Looking for seed trays with drainage to support healthy rooting and easier watering? This guide highlights five practical options ideal for seed starting, microgreens, and small indoor gardens. Each pick is best for a specific setup—whether you need sturdy trays for hydroponics, mesh bottoms for superior drainage, or no holes for drip watering. Read on to compare features, ideal uses, and any limitations to help you choose the right seed trays for your space.
| Product | Best For | Key Benefit |
|---|---|---|
| Living Whole Foods — 10 Plant Growing Trays (with Drain Holes) 20″ x 10″ | Small indoor gardens, seed starting | Drain holes for efficient moisture management |
| RooTrimmer — 10 Pack 1020 Mesh Trays | Professional microgreens, wheatgrass | Full mesh bottom for excellent drainage and air circulation |
| BeGrit — 1020 Mesh Trays with Holes (10″ x 21″) | Durable hydroponics and heavy moisture trays | Reinforced edge, strong drainage, durable |
| Living Whole Foods — 10 Plant Growing Trays (WITH Drain Holes) 21″ x 11″ top | Seed starting, hydroponics in compact spaces | With drain holes; similar footprint, versatile uses |
| ILITING — Plant Growing Seed Starter Trays (1010, 5 Pack) | Shallow-root seedlings, wheatgrass | Drain holes, shallow depth for easy transplanting |
Living Whole Foods: 10 Plant Growing Trays With Drain Holes

Best for compact indoor gardens that require straightforward drainage. These 20″ by 10″ trays (top approx. 21″ by 11″) are designed with drain holes to manage excess moisture quickly, making them suitable for seed starting, hydroponic setups, and general propagation. Ideal for beginners and hobby growers who want simple, reliable trays that are easy to clean and reuse. A potential limitation is edge wear with heavy use; inspect trays regularly for cracks.
RooTrimmer: 10 Pack 1020 Mesh Trays

Best for professional microgreens, seed starting, and hydroponics, thanks to a full mesh bottom that promotes rapid drainage and air circulation. These 21″ x 10.6″ trays are designed to fit standard shelving and provide robust support for dense plantings. They pair well with bottom-watering systems and help maintain steady moisture levels. Limitation: mesh trays can require careful handling to avoid bending the edges during frequent transfers.
BeGrit: 1020 Mesh Trays With Holes

Best for durability and reliable moisture control in hydroponics or soil-based setups. The reinforced edge design supports lifting wet soil without bending, while the mesh bottom enhances drainage and airflow for healthier roots. Choose this if you need a sturdy, reusable tray for frequent use. Caution: ensure compatibility with your shelving or rack system due to height and edge dimensions.
Living Whole Foods: 10 Plant Growing Trays With Drain Holes (Similar Footprint)

Best for seedling growers who want a consistent, drain-hole solution in a slightly larger footprint. Effective for seedling trays and hydroponic setups where precise water management matters. The trade-off is a larger footprint that may require more shelving space. Use when you value stable drainage and a familiar tray size for standard seed flats.
Living Whole Foods: 10 Plant Growing Trays (No Drain Holes)

Best for drip watering and surface cleanliness when you want to avoid drain holes. These trays function well as drip trays or in combination with a separate saucer or outer reservoir. They are less ideal for moisture management in hot or dense setups where drainage is critical. Consider them when you need a low-profile tray for tidy workspaces.
ILITING: Plant Growing Seed Starter Trays (1010, 5 Pack)

Best for shallow-root seedlings and wheatgrass due to its 1.3-inch depth. The 1010 size holds several small pots or nine 3.5-inch square pots, making it versatile for greenhouse or garden use. It includes drain holes for moisture management. Limitation: shallow depth may limit larger plant starts and root development in deeper soils.
Buying Guide: How To Choose The Right Seed Trays With Holes
Material and durability matter. Mesh-bottom trays offer excellent drainage and aeration, which supports faster germination and healthier roots but can be more fragile than solid-bottom trays. If you’ll be handling heavy wet soil or frequent transfers, look for reinforced edging and robust plastic.
Drainage design. Trays with holes excel at moisture control for hydroponics and seed starting. If you use bottom watering, ensure the tray matches your watering method and shelving space. For drip watering, you may prefer a solid-bottom tray paired with an outer reservoir.
Size and compatibility. Consider footprint and height to fit your shelves, racks, or greenhouses. 20″ x 10″ trays are common and pair well with 1020 standards. If you’re growing microgreens or shallow-root crops, a 1.3″ deep tray can prevent waterlogging and ease transplanting.
Usage scenario. For microgreens and wheatgrass, mesh-bottom trays with strong drainage help steady moisture and root development. For seed starting, a sturdy tray with holes and wide rims aids easy lifting and transplanting. If space is tight, a shallower tray may free up room for more planting zones.
Maintenance and reusability. Look for trays designed for easy cleaning and dishwasher compatibility if you want quick turnover. Refillable, BPA-free plastics extend usable life and reduce replacement needs over time.
Frequently Asked Questions
- What is the advantage of mesh-bottom seed trays? They provide superior drainage and air circulation, which helps prevent root rot and promotes healthier root systems for microgreens and seedlings.
- Are drain holes necessary for seed starting? Not always, but holes help with moisture management in hydroponic and damp environments. They’re beneficial when you want quick drainage and lower risk of overwatering.
- Can I use these trays for transplanting? Yes, many trays are designed to release seedlings easily, but check for soft-cell designs to minimize root damage during removal.
- How do I choose tray size for shelving? Measure shelf width and depth, then select a tray that fits with a little clearance for easy removal and cleaning.
- Which trays are best for beginners? Trays with clear drainage and simple cleaning are ideal for new gardeners. Start with a standard 1020 footprint with drain holes for straightforward setup.
- Are these trays BPA-free? Most listed trays use common garden plastics; check product specs for specific material details before purchase.